PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473051
Common NameARALYDRAFT_473051
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 161aa    MW: 17965.3 Da    PI: 10.1479
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473051genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.6e-181968255
     AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            +y+GVr ++ +gr++AeIrd ++    + r++lg+f+t+e Aa+a+++ + +++g
  473051 19 RYRGVRKRP-WGRYAAEIRDpFK----KSRVWLGTFDTPEAAARAYDKRAIEFRG 68
            6********.**********662....5********************9999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.7491976IPR001471AP2/ERF domain
PfamPF008478.0E-121968IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-221977IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-301976IPR001471AP2/ERF domain
CDDcd000181.05E-301977No hitNo description
SMARTSM003804.6E-341982IPR001471AP2/ERF domain
PRINTSPR003677.6E-112031IPR001471AP2/ERF domain
PRINTSPR003677.6E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MTPTVKTAAV KTNDGNGVRY RGVRKRPWGR YAAEIRDPFK KSRVWLGTFD TPEAAARAYD  60
KRAIEFRGAK AKTNFPYYNI NQCLSLSQSQ SLSQSSTVES SIPAINLGSE SVSSRFPFPK  120
IQVKAGMMVV DERSESESSS VVMDLSYEGR RVVLDLDLNF P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-201776363ATERF1
3gcc_A2e-201776363ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00164DAPTransfer from AT1G28370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0558820.0AB055882.1 Arabidopsis thaliana AtERF11 gene for ERF domain protein11, complete cds.
GenBankAC0101550.0AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankAF3602320.0AF360232.1 Arabidopsis thaliana putative ethylene-responsive element binding factor (At1g28370) mRNA, complete cds.
GenBankAY0400320.0AY040032.1 Arabidopsis thaliana putative ethylene-responsive element binding factor (At1g28370) mRNA, complete cds.
GenBankAY0867830.0AY086783.1 Arabidopsis thaliana clone 27635 mRNA, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893525.11e-116hypothetical protein ARALYDRAFT_473051, partial
SwissprotQ9C5I31e-82ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLD7KCW01e-116D7KCW0_ARALL; Putative uncharacterized protein (Fragment)
STRINGfgenesh2_kg.1__3005__AT1G28370.11e-116(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.11e-75ERF domain protein 11